Table 1

Employed primers

NameSequenceTm (°C)Length (nt)
SFB F*†5′-AGG AGG AGT CTG CGG CAC ATT AGC-3′62.924
SFB R*†5′-TCC CCA CTG CTG CCT CCC GTA G-3′65.422
BAC 1114 F‡†5′-CGG CAA CGA GCG CAA CCC-3′63.018
BAC 1275 R‡†5′-CCA TTG TAG CAC GTG TGT AGC C-3′58.322
IL-8 prom F§¶5′-TCA CCA AAT TGT GGA GCT TCA GTA T-3′66.425
IL-8 prom R§¶5′-GGC TCT TGT CCT AGA AGC TTG TGT-3′65.824
  • *Sequences for SFB amplification are taken from Suzuki et al26 and Shukla et al27

  • †Primers were purchased from IDT (IDT Integrated DNA Technologies, Coralville, Iowa, USA).

  • ‡Sequences for total bacteria amplification are taken from Denman and McSweeney28 and Yin et al18

  • §Sequences for IL-8 genomic DNA amplification are taken from Finotti et al29

  • ¶Primers were purchased from Sigma-Aldrich (Sigma-Aldrich, St.Louis, Missouri, USA).

  • IL-8, interleukin-8; SFB, segmented filamentous  bacteria.